| Main rice genomics page |
| Score |
| Score filters using ComboScreenJ. |
| Modify |
| Modify the exposure log |
| Add/Delete filter/serial combos to monitor for new hybs |
| Flag discarded filter/serial combos |
| Select overgos (mainly for filling in gaps from FPC data) |
| Delete overgo plate information |
| Display |
| List overgo details. Used to create FastA and ordering spreadsheet files. |
| List filter information |
| List pool information |
| List hyb bottle information |
| List filter usage information |
| Overgo database. For chromosome 1 work. |
| Quality assurance using known data from Nipponbare |
| Found BACs matching FPC/BES BACs: Determine the percentage of 1D/2D found BACs matching FPC and BES BACs for overgo pools. |
| Overgo Found BACs |
| Given overgos find FPC expected & overgo-found BACs |
| Overgo found BAC stats |
| Nipponbare scored clones per filter. |
| Given a BAC find expected matching overgos. |
| Given a hyb find expected matching overgos. |
| Data analysis (all cultivars and species) |
| Get results of length-overlap test for overgos. Plates 120-123. |
| Current data Includes quicker methods to find BACs than the following program. |
| Found BACs: This program will detect BACs spanning neighboring overgos |
| Library coverage: Determine library coverage for any species based on found BACs. |
| GBrowse: Visually display found BACs and much more. |
| Pool set statistics |
| Found BACs (using Abhijit's probes) |
| Documentation |
| Plate 21 pictorial: PDF and PNG |
| Rice.pm module documentation |
| Comboscreen Protocol |
| Jackson lab documentation |
